Natural language processing for clusterization of genes according to their functions
Электронный научный архив УРФУ
Информация об архиве | Просмотр оригинала| Поле | Значение | |
| Заглавие |
Natural language processing for clusterization of genes according to their functions
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| Автор |
Dordiuk, V.
Demicheva, E. Espino, F. P. Ushenin, K. |
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| Тематика |
BERT
CLUSTERIZATION DIFFERENTIAL GENE EXPRESSION ANALYSIS GENE EXPRESSION GENE ONTOLOGY NATURAL LANGUAGE PROCESSING SEMANTIC ANALYSIS GENE ONTOLOGY NATURAL LANGUAGE PROCESSING SYSTEMS PIPELINES SEMANTICS TEXT PROCESSING BERT CLUSTERIZATION DIFFERENTIAL GENE EXPRESSION ANALYSE DIFFERENTIAL GENE EXPRESSIONS GENE EXPRESSION ANALYSIS GENE ONTOLOGY GENES EXPRESSION LANGUAGE PROCESSING NATURAL LANGUAGE PROCESSING NATURAL LANGUAGES SEMANTIC ANALYSIS GENE EXPRESSION |
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| Описание |
There are hundreds of methods for analysis of data obtained in mRNA-sequencing. The most of them are focused on small number of genes. In this study, we propose an approach that reduces the analysis of several thousand genes to analysis of several clusters. The list of genes is enriched with information from open databases. Then, the descriptions are encoded as vectors using the pretrained language model (BERT) and some text processing approaches. The encoded gene function pass through the dimensionality reduction and clusterization. Aiming to find the most efficient pipeline, 180 cases of pipeline with different methods in the major pipeline steps were analyzed. The performance was evaluated with clusterization indexes and expert review of the results. © 2022 IEEE.
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| Дата |
2024-04-08T11:07:10Z
2024-04-08T11:07:10Z 2022 |
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| Тип |
Conference paper
Conference object (info:eu-repo/semantics/conferenceObject) info:eu-repo/semantics/submittedVersion |
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| Идентификатор |
Dordiuk, V, Demicheva, E, Espino, FP & Ushenin, K 2022, Natural language processing for clusterization of genes according to their functions. в Proceedings - 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2022. Proceedings - 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2022, Institute of Electrical and Electronics Engineers Inc., стр. 1-4. https://doi.org/10.1109/CSGB56354.2022.9865330
Dordiuk, V., Demicheva, E., Espino, F. P., & Ushenin, K. (2022). Natural language processing for clusterization of genes according to their functions. в Proceedings - 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2022 (стр. 1-4). (Proceedings - 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2022). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/CSGB56354.2022.9865330 978-166545288-5 Final All Open Access; Green Open Access https://arxiv.org/pdf/2207.08162 https://arxiv.org/pdf/2207.08162 http://elar.urfu.ru/handle/10995/131416 10.1109/CSGB56354.2022.9865330 85138478040 |
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| Язык |
en
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| Права |
Open access (info:eu-repo/semantics/openAccess)
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| Формат |
application/pdf
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| Издатель |
Institute of Electrical and Electronics Engineers Inc.
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| Источник |
2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine (CSGB)
Proceedings - 2022 Ural-Siberian Conference on Computational Technologies in Cognitive Science, Genomics and Biomedicine, CSGB 2022 |
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